Haplin

Genetic association analyses in R

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Haplin vignettes


Introduction and installation

Introduction and installation

Basic usage

Reading and preparing data

Running Haplin analyses

Advanced topics

Running Haplin on a cluster

Miscellaneous

About the hapRelEff function


Vignettes from within R

Overview of vignettes

vignette(package = "Haplin")

Individual vignettes

library(Haplin)
vignette("A_Haplin_intro_installation")
vignette("B_Reading_data")
vignette("C_Running_Haplin")
vignette("D_Running_Haplin_on_cluster")
vignette("E_hapRelEff")

News

  • Haplin 7.3.2 on CRAN
  • A new paper on sample size calculations in Haplin!
  • Important installation note for Haplin 7 and higher!

Documentation

  • Haplin vignettes
  • Running Haplin
  • Data format
  • Practical advice
  • Power and sample size calculations
  • Models and estimation
  • Complete reference list (pdf)
  • Other documentation

Other

  • Companion package HaplinMethyl
  • How to cite Haplin
  • What's new in this version
  • Earlier versions of Haplin
  • Wish list for Haplin

NORBIS 2022 (for participants)

  • Main course page

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